Why Does My Body Hurt When I Wake Up? | And What to Do About It

Published on May 07, 2025

Updated on May 07, 2025

Updated on May 07, 2025

Table of Contents
Why Does My Body Hurt When I Wake Up?

Waking up feeling stiff, sore, or achy can make it hard to start your day. You might ask yourself, “Why does my body hurt when I wake up, even if I got enough sleep?” Morning body aches, joint pain, and muscle stiffness are common—but they’re not always caused by physical strain alone. Sometimes, the root of the discomfort lies in the brain’s perception of pain.

Let’s explore why you may feel muscle and joint pain in the morning and how brain retraining and addressing physical and lifestyle factors can help relieve morning soreness and improve sleep quality.

At re-origin, we’ve helped thousands of people overcome chronic conditions like pain, chronic fatigue, anxiety and depression, and sensitivities with our neuroscience-backed brain retraining program. If you’re ready to retrain your brain and reclaim your health, learn more about the re-origin program here.

The Morning Pain Puzzle: What’s Really Going On?

Poor Sleep Quality Disrupts Muscle Recovery

Your body performs critical repair work during sleep—regenerating tissues, balancing hormones, and reducing inflammation. But poor-quality sleep, whether caused by stress, sleep apnea, or frequent awakenings, interferes with this process and may lead to more pain upon waking. Research shows a strong link between sleep disturbances, muscle aches, and increased sensitivity to pain.¹ Chronic pain and poor sleep often reinforce each other, forming a frustrating cycle of discomfort and exhaustion.²

Why Does My Body Hurt When I Wake Up? | And What to Do About It

Sleep Posture and Musculoskeletal Strain

The way you sleep can contribute to tension in certain muscles. For example, sleeping on your stomach can compress your spine and neck, and sleeping with your arms overhead can aggravate shoulder pain. Without proper support, joints and muscles may be strained overnight, leading to muscle cramps or joint and muscle pain in the morning.³ A new mattress, a better pillow, or adjustments to your sleep position may reduce stiffness and discomfort.

Neuroplastic Pain: When the Brain Keeps the Pain Switch On

Not All Pain Signals Reflect Physical Damage

Pain is a protective signal—but in some cases, especially with chronic pain, the brain becomes overly sensitized and continues to send pain signals even when there is no ongoing tissue damage. This is called neuroplastic pain, and it’s increasingly recognized as a key factor in conditions like fibromyalgia, chronic back pain, and consistent morning body aches.⁴

When the nervous system stays in a fight-or-flight state due to chronic stress, trauma, or unresolved emotional tension, it can misinterpret safe signals as threatening. This leads to muscle tension, a burning sensation, or feeling “inflamed” even in the absence of an injury.

The Role of Brain Retraining in Morning Pain Relief

How Brain Retraining Calms the Pain Response

Brain retraining uses principles of neuroplasticity—the brain’s ability to change and rewire over time—to shift how the brain interprets sensations. Programs like re-origin that include visualization, relaxation techniques, somatic tracking, and cognitive reframing help reduce the brain’s overactive pain response and restore a sense of safety in the nervous system.

Over time, this can result in fewer morning aches and pains, less sensitivity to movement or sleep posture, and greater resilience to stress. Studies support the idea that addressing both psychological and physical components of chronic pain leads to better outcomes.⁵

Other Contributing Factors to Morning Aches

Underlying Medical Conditions

Conditions such as rheumatoid arthritis, ankylosing spondylitis, or multiple sclerosis can contribute to morning stiffness and pain. These autoimmune and inflammatory disorders often affect joint health, especially after periods of rest. If morning pain is persistent or worsening, it’s essential to talk to your doctor or a medical professional about underlying health conditions that may contribute.

Lifestyle Habits and Inflammation

Processed foods, low vitamin D levels, high body weight, and lack of exercise can all contribute to inflammation and chronic pain. Conversely, a healthy diet, regular movement, and adequate rest can help support physical health and reduce stress-related pain responses.⁶

How to Ease Morning Soreness and Improve Sleep

  • Check your sleep posture: Try to avoid stomach sleeping and use a supportive mattress and pillow.
  • Incorporate relaxation techniques: Meditation, breathwork, or a warm shower before bed can reduce muscle tension.
  • Consider brain retraining: Programs that use neuroplasticity to calm chronic pain can be a powerful tool.
  • Reduce inflammation: Focus on a healthy diet, sleep hygiene, and managing stress.
  • Talk to your healthcare provider: Persistent or severe pain may signal an underlying condition that requires medical attention.

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A Hopeful Path Forward

Morning pain is real—but it’s also manageable. Whether it’s caused by muscle strain, a sleep disorder, chronic stress, or neuroplastic pain, some tools and strategies can help. With the proper support and a holistic approach—including sleep quality, adequate support, lifestyle shifts, and brain retraining—you can start each day feeling stronger, more comfortable, and more in control of your health.

The re-origin program is designed to help you rewire your brain, calm pain signals, and start healing. If you are ready to finally wake up feeling good, learn more about the re-origin program here.

FAQ

Could poor sleep be causing my body aches?

Absolutely. Studies show that sleep disturbances are closely linked to increased aches and pains, especially in people with chronic conditions.² Sleep disorders like sleep apnea can disrupt deep sleep, essential for muscle recovery and inflammation control. If you’re waking up tired and sore, consider speaking with a medical professional to rule out an underlying sleep disorder.

What is neuroplastic pain, and how is it treated?

Neuroplastic pain arises when the brain’s pain circuits become sensitized, causing it to send pain signals even in the absence of injury or inflammation.⁴ This can occur in conditions like chronic pain, fibromyalgia, and morning soreness. Treatment involves calming the nervous system using brain retraining, which includes tools like visualization, relaxation techniques, somatic practices, and cognitive reframing.⁵

What sleep position is best to avoid morning pain?

The ideal sleep posture varies by individual, but generally, sleeping on your back with a pillow that supports the natural curve of your spine is considered safest. Avoid stomach sleeping and keeping your arms overhead, as these can strain your neck, shoulders, and lower back.³ Using proper support, like a new mattress or orthopedic pillow, can reduce joint and muscle pain.

References
  1. Finan, P. H., Goodin, B. R., & Smith, M. T. (2013). The association of sleep and pain: An update and a path forward. The Journal of Pain, 14(12), 1539–1552. https://pmc.ncbi.nlm.nih.gov/articles/PMC6879497/
  2. Haack, M., Simpson, N., Sethna, N., Kaur, S., & Mullington, J. (2020). Sleep deficiency and chronic pain: Potential underlying mechanisms and clinical implications. Neuropsychopharmacology, 45(1), 205–216. https://pubmed.ncbi.nlm.nih.gov/34847195/
  3. Kelly, G. A., Blake, C., Power, C. K., O’Keeffe, D., & Fullen, B. M. (2011). The association between chronic low back pain and sleep: A systematic review. Clinical Journal of Pain, 27(2), 169–181. https://pubmed.ncbi.nlm.nih.gov/31207606/
  4. Kosek, E., Cohen, M., Baron, R., Gebhart, G. F., Mico, J. A., Rice, A. S., & Sterling, M. (2016). Do we need a third mechanistic descriptor for chronic pain states? Pain, 157(7), 1382–1386. https://pubmed.ncbi.nlm.nih.gov/25035267/
  5. Cagnie, B., Coppieters, I., Denecker, S., Six, J., Danneels, L., & Meeus, M. (2014). Central sensitization in fibromyalgia? A systematic review on structural and functional brain MRI. Seminars in Arthritis and Rheumatism, 44(1), 68–75. https://pubmed.ncbi.nlm.nih.gov/26504332/
  6. Haack, M., & Mullington, J. M. (2005). Sustained sleep restriction reduces emotional and physical well-being. Pain, 119(1–3), 56–64. (Included in reference 2)
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